supplemental_material

Attachment 'Cancer_Network.txt'

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   1 ####################################################
   2 #This is the Cancer_Network.sif file.
   3 #Commented lines (#) must be deleted before use
   4 # You must change the extension from .txt to .sif before importing with Cytoscape
   5 #This file connects genes with cancers which are modulated
   6 ####################################################
   7 TF	pp	Ovarian_C
   8 PPBP	pp	Ovarian_C
   9 CFHR2	pp	Ovarian_C
  10 CRP	pp	Ovarian_C
  11 CFHR1	pp	Ovarian_C
  12 RBP4	pp	Ovarian_C
  13 PRAP1	pp	Ovarian_C
  14 ADH4	pp	Ovarian_C
  15 LGALS3BP	pp	Ovarian_C
  16 COMP	pp	Ovarian_C
  17 YWHAZ	pp	Ovarian_C
  18 ADH4	pp	Lunch.Sq_C
  19 CFHR2	pp	Lunch.Sq_C
  20 PPBP	pp	Lunch.Sq_C
  21 PRAP1	pp	Lunch.Sq_C
  22 CRP	pp	Lunch.Sq_C
  23 HBA1	pp	Lunch.Sq_C
  24 TF	pp	Lunch.Sq_C
  25 COMP	pp	Lunch.Sq_C
  26 RBP4	pp	Lunch.Sq_C
  27 CFHR1	pp	Lunch.Sq_C
  28 LGALS3BP	pp	Lunch.Sq_C
  29 TFRC	pp	Lunch.Sq_C
  30 CRP	pp	Colon_C
  31 PPBP	pp	Colon_C
  32 TF	pp	Colon_C
  33 CFHR1	pp	Colon_C
  34 COMP	pp	Colon_C
  35 ADH4	pp	Colon_C
  36 HBA1	pp	Colon_C
  37 RBP4	pp	Colon_C
  38 PRAP1	pp	Colon_C
  39 LGALS3BP	pp	Colon_C
  40 CFHR2	pp	Breast_C
  41 PPBP	pp	Breast_C
  42 TF	pp	Breast_C
  43 ADH4	pp	Breast_C
  44 PRAP1	pp	Breast_C
  45 HBA1	pp	Breast_C
  46 CRP	pp	Breast_C
  47 RBP4	pp	Breast_C
  48 COMP	pp	Breast_C
  49 CFHR1	pp	Breast_C
  50 LGALS3BP	pp	Breast_C
  51 YWHAZ	pp	Breast_C
  52 LGALS3BP	pp	Prostate_C
  53 RBP4	pp	Prostate_C
  54 TF	pp	Prostate_C
  55 COMP	pp	Prostate_C
  56 CFHR1	pp	Prostate_C
  57 ADH4	pp	Prostate_C
  58 CRP	pp	Prostate_C
  59 HBA1	pp	Prostate_C
  60 PRAP1	pp	Prostate_C
  61 PPBP	pp	Prostate_C
  62 CFHR2	pp	Prostate_C
  63 CFHR2	pp	Glioblastoma_C
  64 ADH4	pp	Glioblastoma_C
  65 CFHR1	pp	Glioblastoma_C
  66 RBP4	pp	Glioblastoma_C
  67 CRP	pp	Glioblastoma_C
  68 PPBP	pp	Glioblastoma_C
  69 TF	pp	Glioblastoma_C
  70 COMP	pp	Glioblastoma_C
  71 PRAP1	pp	Glioblastoma_C
  72 LGALS3BP	pp	Glioblastoma_C
  73 ADH4	pp	Kidney_C
  74 CFHR2	pp	Kidney_C
  75 CRP	pp	Kidney_C
  76 TF	pp	Kidney_C
  77 PPBP	pp	Kidney_C
  78 COMP	pp	Kidney_C
  79 HBA1	pp	Kidney_C
  80 RBP4	pp	Kidney_C
  81 PRAP1	pp	Kidney_C
  82 CFHR1	pp	Kidney_C
  83 LGALS3BP	pp	Kidney_C

Attached Files

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  • [get | view] (2012-12-22 11:05:34, 1.7 KB) [[attachment:Cancer_Network.txt]]
  • [get | view] (2012-12-22 11:08:11, 0.7 KB) [[attachment:Cancer_frequency.txt]]
  • [get | view] (2012-12-22 11:01:12, 24.4 KB) [[attachment:Correlation+Cancers.txt]]
  • [get | view] (2012-12-22 10:55:11, 8.4 KB) [[attachment:Correlation_Network.txt]]
  • [get | view] (2012-12-22 11:22:48, 9.2 KB) [[attachment:Edge_Disease.txt]]
  • [get | view] (2012-12-22 10:58:31, 3.7 KB) [[attachment:FDR.txt]]
  • [get | view] (2012-12-24 11:47:48, 351.0 KB) [[attachment:Figure 1.eps]]
  • [get | view] (2012-12-24 11:51:49, 3087.6 KB) [[attachment:Figure 2.eps]]
  • [get | view] (2012-12-24 11:55:50, 314.0 KB) [[attachment:Figure 3.eps]]
  • [get | view] (2012-12-22 10:56:27, 3.4 KB) [[attachment:Fold_Change.txt]]
  • [get | view] (2013-04-03 19:57:12, 57.0 KB) [[attachment:Patient-profile.png]]
  • [get | view] (2012-12-24 10:52:22, 71.2 KB) [[attachment:Supplemental_Table 2.pdf]]
  • [get | view] (2013-04-03 22:21:23, 98.3 KB) [[attachment:Supplemental_Table1.pdf]]
  • [get | view] (2013-04-03 20:56:13, 4067.5 KB) [[attachment:Supplemental_Tutorial.pdf]]
  • [get | view] (2012-12-22 11:24:10, 217.2 KB) [[attachment:network.cys]]
  • [get | view] (2012-12-22 11:32:20, 0.7 KB) [[attachment:only_modulatedEXP.txt]]
  • [get | view] (2012-12-24 19:11:00, 0.3 KB) [[attachment:only_modulated_symbol.txt]]
  • [get | view] (2012-12-22 11:30:53, 11.0 KB) [[attachment:proteinEXP.txt]]
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