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Attachment 'FDR.txt'

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   1 ####################################################
   2 #This is the FDR.NA file.
   3 #Commented lines (#) must be deleted before use.
   4 #You must change the extension from .txt to .NA before importing with Cytoscape.
   5 #This file attributes genes (nodes) with their False Discovery Rate (FDR). 
   6 ####################################################
   7 FDR (class=java.lang.Double)
   8 APOB	=	3.7387
   9 C4B	=	3.8822
  10 FN1	=	1.0937
  11 C3	=	0.2381
  12 FGA	=	0.8998
  13 FGB	=	1.5116
  14 F2	=	1.0011
  15 FGG	=	1.0398
  16 CFH	=	0.3813
  17 ALB	=	0.2179
  18 APOA1	=	0.5373
  19 C1R	=	0.5006
  20 C1S	=	0.6049
  21 APOA4	=	2.2612
  22 PLG	=	1.1599
  23 VTN	=	9.7664
  24 APOE	=	0.507
  25 CP	=	10.683
  26 C4BPA	=	0.2411
  27 F5	=	1.6297
  28 FBLN1	=	1.7146
  29 IGHM	=	2.6618
  30 CLU	=	1.2948
  31 F13B	=	0.5809
  32 PROS1	=	2.1932
  33 PZP	=	0.0073
  34 TF	=	0.0198
  35 CFHR5	=	4.2119
  36 IGHG3	=	0.0216
  37 AHSG	=	0.3469
  38 THBS1	=	1.567
  39 GPLD1	=	20.1163
  40 PON1	=	0.6669
  41 ITIH4	=	5.0587
  42 LGALS3BP	=	0.0446
  43 F13A1	=	1.0583
  44 A1AT	=	3.6141
  45 CNDP1	=	2.7334
  46 APOA2	=	1.4828
  47 LTF	=	1.3782
  48 F12	=	1.1989
  49 MASP1	=	14.7913
  50 CD5L	=	0.8486
  51 FCN3	=	0.3691
  52 GC	=	0.0812
  53 HRG	=	0.038
  54 CDH5	=	5.601
  55 HP	=	0.6964
  56 C9	=	0.2295
  57 PLTP	=	30.5974
  58 TTR	=	0.1646
  59 IGHA1	=	2.3808
  60 A2M	=	11.7809
  61 C4BPB	=	0.314
  62 APOL1	=	0.325
  63 TPM4	=	0.0029
  64 GPX3	=	0.399
  65 QSOX1	=	13.1217
  66 GSN	=	0.935
  67 KLKB1	=	0.3034
  68 ITIH2	=	1.1802
  69 FCN2	=	2.9125
  70 SERPIND1	=	0.1943
  71 KNG1	=	1.6706
  72 APOC2	=	1.8421
  73 ACTB	=	0.0566
  74 F10	=	0.5484
  75 SERPINA10	=	0.611
  76 PGLYRP2	=	2.3205
  77 EFEMP1	=	2.8175
  78 APCS	=	0.3735
  79 LYZ	=	0.1037
  80 PF4	=	0.0349
  81 SPARC	=	1.0258
  82 LBP	=	6.7234
  83 IGKC	=	0.2881
  84 LCAT	=	1.3152
  85 APOD	=	0.6746
  86 APOC3	=	0.3309
  87 FBLN5	=	0.1578
  88 F7	=	0.5168
  89 C1QB	=	1.5376
  90 HPX	=	2.0105
  91 CFHR1	=	0
  92 VWF	=	0.6555
  93 LAC2	=	0.9611
  94 APOC4	=	0.1523
  95 SAA1	=	17.1109
  96 MASP2	=	1.7572
  97 HABP2	=	0.247
  98 APOC1	=	1.3547
  99 ANG	=	5.3122
 100 CETP	=	0.2812
 101 COMP	=	0.1621
 102 HBB	=	0.0942
 103 SEPP1	=	3.4935
 104 TLN1	=	1.1196
 105 A1BG	=	7.6904
 106 CFP	=	0.1419
 107 PROC	=	24.4442
 108 PRG4	=	0.0214
 109 IGFBP3	=	0.3875
 110 C1QC	=	3.2144
 111 IGHV3-23	=	0.2755
 112 FBN1	=	1.2552
 113 IGHG1	=	1.4539
 114 LUM	=	2
 115 HGFAC	=	8.3079
 116 CAMP	=	0.0268
 117 IGKV3-20	=	1.8931
 118 CDH1	=	0.5989
 119 SERPING1	=	8.9777
 120 F11	=	0.5722
 121 TGFBI	=	4.8321
 122 SERPINC1	=	0.3074
 123 SPARCL1	=	0.7273
 124 ADAMTS13	=	0.8245
 125 IGFALS	=	3.0219
 126 ORM1	=	0.2067
 127 CD14	=	0.1216
 128 PCSK9	=	0.1435
 129 APOM	=	0.735
 130 IGJ	=	0.922
 131 RBP4	=	0.0435
 132 SERPINF2	=	0.7146
 133 CLEC3B	=	0.4121
 134 P4HB	=	40.818
 135 ACTN1	=	0.0028
 136 ITIH3	=	4.4245
 137 IGHG2	=	3.374
 138 AMBP	=	0.1311
 139 PCOLCE	=	1.5959
 140 ENO1	=	0.2789
 141 SAA4	=	0.3522
 142 DEFA1	=	0.2234
 143 YWHAZ	=	0.0041
 144 CALR	=	6.2582
 145 MBL2	=	1.4233
 146 LV302	=	0.5245
 147 LTBP1	=	0.0817
 148 SERPINA4	=	2.5092
 149 HBA1	=	0.0134
 150 OIT3	=	0.3274
 151 
 152 IGFBP5	=	0.5
 153 F9	=	0.0496
 154 CXCL12	=	1.4005
 155 APOH	=	0.6229
 156 C8B	=	2.5853
 157 PON3	=	0.7058
 158 COLEC11	=	0.9848
 159 MMP2	=	1.2743
 160 SHBG	=	1.8013
 161 C5	=	0.9486
 162 C1QA	=	1.2364
 163 AGT	=	0.9723
 164 CRP	=	0.0173
 165 ITIH1	=	2.071
 166 IGKV4-1	=	0.0554
 167 DSG2	=	0.2907
 168 LRP1	=	0.8148
 169 TFRC	=	0.0078
 170 PCYOX1	=	7.171
 171 VCP	=	0.0067
 172 PPBP	=	0.0212
 173 HV305	=	0.0001
 174 TPM3L	=	0.8384
 175 RNASE4	=	0.0822
 176 HV320	=	0.4523
 177 HIST1H1D	=	0.0595
 178 RARRES2	=	0.0729
 179 CFHR4	=	0.0488
 180 KRT1	=	0.0188
 181 IGLC2	=	0.2163
 182 SPP2	=	0.2735
 183 INHBC	=	0.1177
 184 IGKV1D-16	=	1.0135
 185 HP	=	0.1295
 186 
 187 ORM2	=	0.0048
 188 CRTAC1	=	2.1266
 189 CDH6	=	1.931
 190 CFHR2	=	0.0194
 191 IGF2	=	0.2674
 192 MST1P9	=	0.116
 193 CHGA	=	0.3494
 194 LV106	=	4.0464
 195 COL6A3	=	0.7892
 196 IGKV3-11	=	0.0625
 197 ADIPOQ	=	1.1343
 198 SPTBN4	=	0.1069
 199 SERPINA3	=	3.1163
 200 S100A8	=	0.0143
 201 
 202 BPIFB1	=	0
 203 
 204 HSPG2	=	0.002
 205 MMRN2	=	0.5628
 206 F10A5	=	0.1827
 207 HV102	=	0.745
 208 LECT2	=	0.4627
 209 
 210 SVEP1	=	0.6816
 211 C20orf3	=	0.2345
 212 QPCT	=	0.8719
 213 CDH13	=	0.4907
 214 FRMPD1	=	1.2158
 215 RAC1	=	0.197
 216 WISP2	=	0.3633
 217 NUCB1	=	0.1803
 218 EIF5A	=	0.012
 219 MGP	=	1.0761
 220 HTRA1	=	61.3577
 221 ECM1	=	0.3095
 222 HYAL1	=	0.7749
 223 
 224 
 225 PCDH18	=	0.861
 226 PSAP	=	0.755
 227 RAN	=	0.0699
 228 SFTPB	=	0.6492
 229 ADH4	=	0.0126
 230 OAF	=	0.0834
 231 APOF	=	2.4482
 232 DPT	=	0.1205
 233 HV209	=	0.0204
 234 RAP1A	=	0.0065
 235 H2AFX	=	0.025
 236 
 237 IGFBP1	=	0.9119
 238 IGLV7-43	=	0.4217
 239 SOD3	=	0.0395
 240 PRAP1	=	0.0152
 241 C1QTNF3	=	0.342
 242 
 243 CALU	=	0
 244 HIST1H2BD	=	0.0419
 245 AFM	=	5.9285
 246 HV201	=	0.0001
 247 C7	=	0.3585
 248 KRT10	=	0.2437
 249 STAB2	=	0.256
 250 GANAB	=	4.6282
 251 LV301	=	0.4354
 252 IGKV2-30	=	0.0001

Attached Files

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  • [get | view] (2012-12-22 11:05:34, 1.7 KB) [[attachment:Cancer_Network.txt]]
  • [get | view] (2012-12-22 11:08:11, 0.7 KB) [[attachment:Cancer_frequency.txt]]
  • [get | view] (2012-12-22 11:01:12, 24.4 KB) [[attachment:Correlation+Cancers.txt]]
  • [get | view] (2012-12-22 10:55:11, 8.4 KB) [[attachment:Correlation_Network.txt]]
  • [get | view] (2012-12-22 11:22:48, 9.2 KB) [[attachment:Edge_Disease.txt]]
  • [get | view] (2012-12-22 10:58:31, 3.7 KB) [[attachment:FDR.txt]]
  • [get | view] (2012-12-24 11:47:48, 351.0 KB) [[attachment:Figure 1.eps]]
  • [get | view] (2012-12-24 11:51:49, 3087.6 KB) [[attachment:Figure 2.eps]]
  • [get | view] (2012-12-24 11:55:50, 314.0 KB) [[attachment:Figure 3.eps]]
  • [get | view] (2012-12-22 10:56:27, 3.4 KB) [[attachment:Fold_Change.txt]]
  • [get | view] (2013-04-03 19:57:12, 57.0 KB) [[attachment:Patient-profile.png]]
  • [get | view] (2012-12-24 10:52:22, 71.2 KB) [[attachment:Supplemental_Table 2.pdf]]
  • [get | view] (2013-04-03 22:21:23, 98.3 KB) [[attachment:Supplemental_Table1.pdf]]
  • [get | view] (2013-04-03 20:56:13, 4067.5 KB) [[attachment:Supplemental_Tutorial.pdf]]
  • [get | view] (2012-12-22 11:24:10, 217.2 KB) [[attachment:network.cys]]
  • [get | view] (2012-12-22 11:32:20, 0.7 KB) [[attachment:only_modulatedEXP.txt]]
  • [get | view] (2012-12-24 19:11:00, 0.3 KB) [[attachment:only_modulated_symbol.txt]]
  • [get | view] (2012-12-22 11:30:53, 11.0 KB) [[attachment:proteinEXP.txt]]
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